Publications | Strand NGS | Next generation sequencing

Selected publications citing Strand NGS - formerly Avadis NGS

2020

Identification of Novel Rare ABCC1 Transporter Mutations in Tumor Biopsies of Cancer Patients
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Combining genetic crosses and pool targeted DNA-seq for untangling genomic variations associated with resistance to multiple insecticides in the mosquito Aedes aegypti
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Decreased PEDF Promotes Hepatic Fatty Acid Uptake and Lipid Droplet Formation in the Pathogenesis of NAFLD
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MN1 C-terminal truncation syndrome is a novel neurodevelopmental and craniofacial disorder with partial rhombencephalosynapsis
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RNA-Seq transcriptome profiling in three liver regeneration models in rats: comparative analysis of partial hepatectomy, ALLPS, and PVL
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β-L-1-[5-(E-2-Bromovinyl)-2-(hydroxymethyl)-1,3-dioxolan-4-yl)] uracil (L-BHDU) effectiveness against varicella-zoster virus and herpes simplex virus type 1 depends on thymidine kinase activity
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Short-term organoid culture for drug sensitivity testing of high-grade serous carcinoma
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Betaine restores epigenetic control and supports neuronal mitochondria in the cuprizone mouse model of multiple sclerosis
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Global microRNA profiling in human urinary exosomes reveals novel disease biomarkers and cellular pathways for Autosomal Dominant Polycystic Kidney Disease
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The small Ca 2+-binding protein CSE links Ca 2+ signalling with nitrogen metabolism and filament integrity in Anabaena sp. PCC 7120
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Reduced miR-26b Expression in Megakaryocytes and Platelets Contributes to Elevated Level of Platelet Activation Status in Sepsis
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Individual Limb Muscle Bundles Are Formed through Progressive Steps Orchestrated by Adjacent Connective Tissue Cells during Primary Myogenesis
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Gli3 utilizes Hand2 to synergistically regulate tissue-specific transcriptional networks
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Genome-wide characterization of STAT1 and NFκB-mediated Signal Integration in Vascular Inflammation
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Essential functions of the CNOT7/8 catalytic subunits of the CCR4-NOT complex in mRNA regulation and cell viability
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Integrin-Mediated Focal Anchorage Drives Epithelial Zippering during Mouse Neural Tube Closure
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Hashing data-processing steps in workflow environments
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Activated FGF2 signaling pathway in tumor vasculature is essential for acquired resistance to anti-VEGF therapy
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PROTEIN PHOSPHATASE 2A-B′γ controls Botrytis cinerea resistance and developmental leaf senescence
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The CCR4-NOT complex maintains liver homeostasis through mRNA deadenylation
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Essential functions of the CNOT7/8 catalytic subunits of the CCR4-NOT complex in mRNA regulation and cell viability
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Identification of differentially expressed microRNAs in the skin of experimentally sensitized naturally affected atopic beagles by next-generation sequencing
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Individual Limb Muscle Bundles Are Formed through Progressive Steps Orchestrated by Adjacent Connective Tissue Cells during Primary Myogenesis
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Tacrolimus-and sirolimus-induced human β cell dysfunction is reversible and preventable
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2019

17β-Estradiol protects the esophageal epithelium from IL-13-induced barrier dysfunction and remodeling
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1q42.12q42.2 Deletion in a Child with Midline Defects and Hypoplasia of the Corpus Callosum
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A Bigenic mouse model of FSGS reveals perturbed pathways in podocytes, mesangial cells and endothelial cells
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A cytochrome P450 allele confers pyrethroid resistance on a major African malaria vector, reducing insecticide-treated bednet efficacy
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A novel Ca2+-binding protein influences photosynthetic electron transport in Anabaena sp. PCC 7120
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A rare case report on novel pathogenic mutation of TSC2 gene explained at molecular level
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Aberrant epigenetic gene regulation in hippocampal neurogenesis of mouse offspring following maternal exposure to 3,3'-iminodipropionitrile
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AKR1C3 promotes AR-V7 protein stabilization and confers resistance to AR-targeted therapies in advanced prostate cancer
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An Ophthalmic Targeted Exome Sequencing Panel as a Powerful Tool to Identify Causative Mutations in Patients Suspected of Hereditary Eye Diseases
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Antiviral activity of zinc sulfate against hepatitis A virus replication
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BELL 1 -like homeobox genes regulate inflorescence architecture and meristem maintenance in rice
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Bioinformatic analysis of long-lasting transcriptional and translational changes in the basolateral amygdala following acute stress
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Cellular and viral miRNA expression in polyomavirus BK infection
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ChIP-seq Analysis to Explore DNA Replication Profile in Trifluridine-treated Human Colorectal Cancer Cells In Vitro
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Clinical significance of the mutational landscape and fragmentation of circulating tumor DNA in renal cell carcinoma
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Combined Targeting of Estrogen Receptor Alpha and XPO1 Prevent Akt Activation, Remodel Metabolic Pathways and Induce Autophagy to Overcome Tamoxifen Resistance
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Combining genetic crosses and pool targeted DNA-seq for untangling genomic variations associated with resistance to multiple insecticides in the dengue vector Aedes aegypti
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Connective Tissue Growth Factor Inhibition Enhances Cardiac Repair and Limits Fibrosis After Myocardial Infarction
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Decrease in miR-148a expression during initiation of chief cell transdifferentiation.
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Defining housekeeping genes suitable for RNA-seq analysis of the human allograft kidney biopsy tissue
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Diagnosis of T-cell-mediated kidney rejection in formalin-fixed, paraffin-embedded tissues using RNA-Seq-based machine learning algorithms
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Differential YAP expression in glioma cells induces cell competition and promotes tumorigenesis
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Dynamic changes to lipid mediators support transitions among macrophage subtypes during muscle regeneration
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Dynamic ubiquitination determines transcriptional activity of the plant immune coactivator NPR1
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Ectonucleoside Triphosphate Diphosphohydrolase-3 Antibody Targets Adult Human Pancreatic β Cells for In~Vitro and In~Vivo Analysis
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Elucidating the transcriptional program of feline injection-site sarcoma using a cross-species mRNA-sequencing approach
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Evidence for a non-canonical JAK/STAT signaling pathway in the synthesis of the brain's major ion channels and neurotransmitter receptors
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Fatty-acid receptor CD36 functions as a hydrogen sulfide-targeted receptor with its Cys333-Cys272 disulfide bond serving as a specific molecular switch to accelerate gastric cancer metastasis
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Free fatty acids rewire cancer metabolism in obesity-associated breast cancer via estrogen receptor and mTOR signaling
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Genomic Prediction of One Year Survival Status Related to Functional Recovery Potential in Advanced Heart Failure Patients Undergoing Mechanical Circulatory Support
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HDAC1-mediated repression of the retinoic acid-responsive gene ripply3 promotes second heart field development
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Hypoxia-induced Pulmonary Hypertension in Different Mouse Strains: Relation to Transcriptome
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Identification of new hypoxia-regulated epithelial-mesenchymal transition marker genes labeled by H3K4 acetylation
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Immune Checkpoint B7x (B7-H4/B7S1/VTCN1) is Over Expressed in Spontaneous Canine Bladder Cancer: The First Report and its Implications in a Preclinical Model
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Indoleamine 2,3-Dioxygenase Activity in Chlamydia muridarum and Chlamydia pneumoniae Infected Mouse Lung Tissues
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Lenvatinib plus anti-PD-1 antibody combination treatment activates CD8+ T cells through reduction of tumor-associated macrophage and activation of the interferon pathway
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Long non-coding RNA FAM83H-AS1 is regulated by human papillomavirus 16 E6 independently of p53 in cervical cancer cells
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m1A Regulated Genes Modulate PI3K/AKT/mTOR and ErbB Pathways in Gastrointestinal Cancer
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Modulation of Pseudomonas aeruginosa Quorum Sensing by Glutathione
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Multi-faceted inhibition of dendritic cell function by CD4+ Foxp3+ regulatory T cells
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Multi-gene testing in neurological disorders showed an improved diagnostic yield: data from over 1000 Indian patients
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Photoinhibition of Photosystem I Provides Oxidative Protection During Imbalanced Photosynthetic Electron Transport in Arabidopsis thaliana
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Physiological and transcriptional response of Candida parapsilosis to exogenous tyrosol
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Placental expression of microRNAs in infants born small for gestational age
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Postnatal liver functional maturation requires Cnot complex-mediated decay of mRNAs encoding cell cycle and immature liver genes
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Programmed Delay of a Virulence Circuit Promotes Salmonella Pathogenicity
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Protocols for the Analysis of microRNA Expression, Biogenesis, and Function in Immune Cells
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RNA sequencing and transcriptome analysis of buffalo ( Bubalus bubalis ) blastocysts produced by somatic cell nuclear transfer and in vitro fertilization
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RNA-sequencing reveals a multitude of effects of silver nanoparticles on Pseudomonas aeruginosa biofilms
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Signal Integration of IFN-I and IFN-II With TLR4 Involves Sequential Recruitment of STAT1-Complexes and NFκB to Enhance Pro-inflammatory Transcription
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Single-cell RNA sequencing identifies inflammatory tissue T cells in eosinophilic esophagitis
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Study of Environmental Enteropathy and Malnutrition (SEEM) in Pakistan: protocols for biopsy based biomarker discovery and validation
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Targeting MRTF/SRF in CAP2-dependent dilated cardiomyopathy delays disease onset
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TGF-β signaling promotes tube-structure-forming growth in pancreatic duct adenocarcinoma
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The Forkhead box F1 transcription factor inhibits collagen deposition and accumulation of myofibroblasts during liver fibrosis
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The signaling axis atypical protein kinase C λ/ι-Satb2 mediates leukemic transformation of B-cell progenitors
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Transcriptome and proteome analyses to investigate the molecular underpinnings of cold response in the Colorado potato beetle, Leptinotarsa decemlineata
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Transcriptomic analysis of the BDNF-induced JAK/STAT pathway in neurons: a window into epilepsy-associated gene expression
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Comprehensive assessment of gene fusion detection, prioritization, annotation, and characterization
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Screening of over 1500 Indian patients affected with neurological disorders by multi-gene testing showed an improved diagnostic yield.
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Automated reporting of germline variants using machine learning approaches.
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An Architecture For Decision Analysis Of Genomics Data
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Quality control assessment of the RNA-Seq data generated from liver and pituitary transcriptome of Hereford bulls using StrandNGS software
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Homozygous sequestosome 1 (SQSTM1) mutation: a rare cause for childhood-onset progressive cerebellar ataxia with vertical gaze palsy
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Targeted sequencing of the DMD locus: A comprehensive diagnostic tool for all mutations
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microRNA and mRNA interactions in induced pluripotent stem cell reprogramming of lymphoblastoid cell lines
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Nucleoporin insufficiency disrupts a pluripotent regulatory circuit in a pro-arrhythmogenic stem cell line
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Whole transcriptome analysis of smoker palatal mucosa identifies multiple downregulated innate immunity genes
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Deletion of the fungus specific protein phosphatase Z1 exaggerates the oxidative stress response in Candida albicans
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Aberrant ERG expression associates with downregulation of miR‐4638‐5p and selected genomic alterations in a subset of diffuse large B-cell lymphoma
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Effects of Human Adipose Tissue-Derived and Umbilical Cord Tissue-Derived Mesenchymal Stem Cells in a Dextran Sulfate Sodium-Induced Mouse Model
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Tamoxifen induction of Cre recombinase does not cause long-lasting or sexually divergent responses in the CNS epigenome or transcriptome: implications for the design of aging studies
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Inducible cell-specific mouse models for paired epigenetic and transcriptomic studies of microglia and astroglia
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Epigenetic repression of retinoic acid responsive genes for cardiac outflow tract formation
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Cis-regulatory CYP6P9b P450 variants associated with loss of insecticide-treated bed net efficacy against Anopheles funestus
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Drought tolerant maize
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Regulation of the long non-coding RNA FAM83H-AS1 by human papillomavirus in cervical cancer
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The signaling axis atypical protein kinase C λ/ι-Satb2 mediates leukemic transformation of B-cell progenitors
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Lived Experiences of African American Females With Breast Cancer Treatment Access
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Deciphering the Mechanisms of WT1 Glomerulopathy
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microRNA and mRNA interactions in induced pluripotent stem cell reprogramming of lymphoblastoid cell lines
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Circulating microRNAs in Fabry Disease
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Acid microenvironment promotes cell survival of human bone sarcoma through the activation of cIAP proteins and NF-κB pathway
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Tungstate treatment of the dysbiosis associated with gastrointestinal inflammation
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The Immune Protein Calprotectin Impacts Clostridioides difficile Metabolism through Zinc Limitation
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The Forkhead Box F1 Transcription Factor in Disease and Development
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Upregulation of fibronectin following loss of p53 function is a poor prognostic factor in ovarian carcinoma with a unique immunophenotype
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BBA-Bioenergetics
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CALCIUM SIGNALLING IN THE FILAMENTOUS AND NITROGEN-FIXING CYANOBACTERIUM ANABAENA SP. PCC 7120
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2018

A case report of reversible generalized seizures in a patient with Waardenburg syndrome associated with a novel nonsense mutation in the penultimate exon of SOX10
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A distinct isoform of ZNF207 controls self-renewal and pluripotency of human embryonic stem cells
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A Missense Mutation in the NSF Gene Causes Abnormal Golgi Morphology in Arabidopsis thaliana
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A PAX5-OCT4-PRDM1 developmental switch specifies human primordial germ cells
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A potential common role of the Jumonji C domain containing 1A histone demethylase and chromatin remodeler ATRX in promoting colon cancer
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Aberrant Epigenetic Gene Regulation in GABAergic Interneuron Subpopulations in the Hippocampal Dentate Gyrus of Mouse Offspring Following Developmental Exposure to Hexachlorophene
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Acinetobacter baumannii OxyR Regulates the Transcriptional Response to Hydrogen Peroxide
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Airway epithelial cells prime plasmacytoid dendritic cells to respond to pathogens via secretion of growth factors
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Alternative Splicing of FOXP3 Controls Regulatory T Cell Effector Functions and Is Associated With Human Atherosclerotic Plaque Stability
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Analysis of solid tumor mutation profiles in liquid biopsy
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Association between Altered Expression and Genetic Variations of Transforming Growth Factor β-Smad Pathway with Chronic Myeloid Leukemia.
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Association between Multidimensional Molecular Biomarkers and Functional Recovery Potential in Advanced Heart Failure
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Bringing bioinformatics to the scientific masses
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c-Maf controls immune responses by regulating disease-specific gene networks and repressing IL-2 in CD4+ T cells
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Circulating miRNAs as diagnostic biomarkers for adolescent idiopathic scoliosis
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Compensatory Expression of Nur77 and Nurr1 Regulates NF-κB–Dependent Inflammatory Signaling in Astrocytes
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Combined effects of FH (E404D) and ACOX2 (R409H) cause metabolic defects in primary cardiac malignant tumor
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Comprehensive analysis of small RNA profile by massive parallel sequencing in HTLV-1 asymptomatic subjects with monoclonal and polyclonal rearrangement of the T-cell antigen receptor γ-chain
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Constitutive BiP protein accumulation in Arabidopsis mutants defective in a gene encoding chloroplast-resident stearoyl-acyl carrier protein desaturase
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Crizotinib induces apoptosis and gene expression changes in ALK+ anaplastic large cell lymphoma cell lines; brentuximab synergizes and doxorubicin antagonizes
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Cystic fibrosis-related diabetes is caused by islet loss and inflammation
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Degradation of recombinant proteins by Chinese hamster ovary host cell proteases is prevented by matriptase-1 knockout
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Difference in morphology and interactome profiles between orthotopic and subcutaneous gastric cancer xenograft models
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Disruption of Hox9,10,11 function results in cellular level lineage infidelity in the kidney
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Down-expression of P2RX2, KCNQ5, ERBB3 and SOCS3 through DNA hypermethylation in elderly women with presbycusis
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Dysregulation of NRXN1 by mutant MIR8485 leads to calcium overload in pre-synapses inducing neurodegeneration in Multiple sclerosis
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Effects of doxorubicin on sperm DNA methylation in mouse models of testicular toxicity
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Epigenetic and Transcriptome Profiling Identifies a Population of Visceral Adipose-Derived Progenitor Cells with the Potential to Differentiate into an Endocrine Pancreatic Lineage
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Epigenetic intersection of BDNF Val66Met genotype with premenstrual dysphoric disorder transcriptome in a cross-species model of estradiol add-back
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Establishment of mouse gingival junctional epithelial cell line using a bioengineered tooth system
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Loss of Wwox drives metastasis in triple-negative breast cancer by JAK2/STAT3 axis
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Genetic heterogeneity in Van der Woude syndrome: identification of NOL4 and IRF6 haplotype from the noncoding region as candidates in two families
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Genetic variants in post myocardial infarction patients presenting with electrical storm of unstable ventricular tachycardia
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GENIPAC: A Genomic Information Portal for Head and Neck Cancer Cell Systems
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Glycosylation-dependent modulation of the lL-2 signaling axis determines Th17 differentiation and IL-10 production
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Heme sensing and detoxification by HatRT contributes to pathogenesis during Clostridium difficile infection
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HOTAIR is a REST-regulated lncRNA that promotes neuroendocrine differentiation in castration resistant prostate cancer
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Identification of a case of SRD5A3-congenital disorder of glycosylation (CDG1Q) by exome sequencing
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Identification of potential markers of fatal hypothermia by a body temperature-dependent gene expression assay
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Identification of prognostic and susceptibility markers in chronic myeloid leukemia using next generation sequencing
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Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis
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Immunotopographical Differences of Human Skin
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Impact of single nucleotide polymorphisms on P450 oxidoreductase and peroxisome proliferator-activated receptor alpha on tacrolimus pharmacokinetics in renal transplant recipients
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Improving the efficiency of gene insertion in a human artificial chromosome vector and its transfer in human-induced pluripotent stem cells
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Incorporating epilepsy genetics into clinical practice: a 360° evaluation
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Inhibition of TAZ contributes radiation-induced senescence and growth arrest in glioma cells
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KLF5 controls glutathione metabolism to suppress p190-BCR-ABL+ B-cell lymphoblastic leukemia
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Locus-specific concordance of genomic alterations between tissue and plasma circulating tumor DNA in metastatic melanoma
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LSD1 mediates metabolic reprogramming by glucocorticoids during myogenic differentiation
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Malignant canine mammary epithelial cells shed exosomes containing differentially expressed microRNA that regulate oncogenic networks
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Mechanically induced development and maturation of human intestinal organoids in vivo
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Medicarpin induces lipolysis via activation of Protein Kinase A in brown adipocytes
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Misdiagnosis of X-linked retinitis pigmentosa in a choroideremia patient with heavily pigmented fundi
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Mutation Spectrum of GNE Myopathy in the Indian Sub-Continent
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Naturally-occurring canine invasive urothelial carcinoma harbors luminal and basal transcriptional subtypes found in human muscle invasive bladder cancer
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Neonatal lactocrine deficiency affects the adult porcine endometrial transcriptome at pregnancy day 13
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Next-generation sequencing-based miRNA expression analysis in Parp1 -deficient embryonic stem cell-derived exosomes
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Nuclear Respiratory Factor 1 (NRF-1) Controls the Activity Dependent Transcription of the GABA-A Receptor Beta 1 Subunit Gene in Neurons
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NUP155 insufficiency recalibrates a pluripotent transcriptome with network remodeling of a cardiogenic signaling module
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O-GlcNAc transferase missense mutations linked to X-linked intellectual disability deregulate genes involved in cell fate determination and signaling
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Polyomavirus BK Nephropathy-Associated Transcriptomic Signatures
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Prediction of Drug-Plasma Protein Binding Using Artificial Intelligence Based Algorithms
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Prominent role of RAB39A-RXRB axis in cancer development and stemness
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Prospective Isolation and Characterization of Genetically and Functionally Distinct AML Subclones
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Proteasome-associated HECT-type ubiquitin ligase activity is required for plant immunity
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Proteostasis by STUB1/HSP70 complex controls sensitivity to androgen receptor targeted therapy in advanced prostate cancer
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Pulmonary Transplantation of Human Induced Pluripotent Stem Cell-derived Macrophages Ameliorates Pulmonary Alveolar Proteinosis
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Riluzole reduces amyloid beta pathology, improves memory, and restores gene expression changes in a transgenic mouse model of early-onset Alzheimer's disease
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ROS-independent ER stress-mediated NRF2 activation promotes warburg effect to maintain stemness-associated properties of cancer-initiating cells
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SAMHD1 is recurrently mutated in T-cell prolymphocytic leukemia.
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Screening of over 1000 Indian patients with breast and/or ovarian cancer with a multi-gene panel: prevalence of BRCA1/2 and non-BRCA mutations
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Sequencing of intraductal biopsies is feasible and potentially impacts clinical management of patients with indeterminate biliary stricture and cholangiocarcinoma
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SOX9 is dispensable for the initiation of epigenetic remodeling and the activation of marker genes at the onset of chondrogenesis
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Spontaneous development of Alzheimer's disease-associated brain pathology in a Shugoshin-1 mouse cohesinopathy model
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Targeting miR-223 in neutrophils enhances the clearance of Staphylococcus aureus in infected wounds
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The Aβ Containing Brain Extracts Having Different Effects in Alzheimer's Disease Transgenic Caenorhabditis elegans and Mice
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The Nuclear Receptor PPARγ Controls Progressive Macrophage Polarization as a Ligand-Insensitive Epigenomic Ratchet of Transcriptional Memory
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The Pseudomonas aeruginosa Orphan Quorum Sensing Signal Receptor QscR Regulates Global Quorum Sensing Gene Expression by Activating a Single Linked Operon
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TRAIN (Transcription of Repeats Activates INterferon) in response to chromatin destabilization induced by small molecules in mammalian cells
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Transcriptional and epigenetic modulation of autophagy promotes EBV oncoprotein EBNA3C induced B-cell survival
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Transcriptional Profiling of Age-Associated Gene Expression Changes in Human Circulatory CD1c+ Myeloid Dendritic Cell Subset
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Trends and Associations of Serial NT-proBNP Measured After Ventricular Assist Device Implantation
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Urinary Exosome-Derived microRNAs Reflecting the Changes in Renal Function in Cats
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Using a Non-supervised Network Analysis to Contextualize a 28 Predictive Gene Classifier Accessing Functional Recovery Potential of Patients Undergoing Mechanical Support
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Validation of Suitable Housekeeping Genes for the Normalization of mRNA Expression for Studying Tumor Acidosis
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Various addiction patterns, dietary habits, associated medical problems, and socioeconomic status in gastrointestinal malignancies: A prospective study in rural area of Maharashtra, India
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XY oocytes of sex-reversed females with a Sry mutation deviate from the normal developmental process beyond the mitotic stage
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α Cell Function and Gene Expression Are Compromised in Type 1 Diabetes.
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2017

The Impact Of Systematic Lymphadenectomy In The Management Of Epithelial Ovarian Cancer: A Single Institution Experience.
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MicroRNA expression changes in association with changes in interleukin-1ß/interleukin10 ratios produced by monocytes in autism spectrum disorders: their association with neuropsychiatric symptoms and comorbid conditions (observational study)
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Progressive Gastrointestinal Stromal Tumor (Gist) Associated With A Resistant C-Kit Mutation After Imatinib Treatment.
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Clinical And Prognostic Implication Of Multigene Profiling In Colorectal Cancer Patients
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Multigene Profiling To Identify Clinically Relevant Actionable Mutations In Head And Neck Cancers: An Indian Study.
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Comparative Dosimetric Study Of Computed Tomography Versus Magnetic Resonance Imaging Based Treatment For Intracavitary Brachytherapy In Locally Advanced Carcinoma Cervix Using Cobalt 60 Source.
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Various Addiction Patterns, Dietary Habits, Associated Medical Problems And Socioeconomic Status In Gastro-IntestinalMalignancies: A Prospective Study In Rural Area Of Maharashtra, India
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Therapeutic strategies and genetic profile comparisons in small cell carcinoma and large cell neuroendocrine carcinoma of the lung using next-generation sequencing
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Dietary intervention rescues myopathy associated with neurofibromatosis type 1
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Bazedoxifene and conjugated estrogen combination maintains metabolic homeostasis and benefits liver health
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Association between preoperative peripheral blood mononuclear cell gene expression profiles, early postoperative organ function recovery potential and long-term survival in advanced heart failure patients undergoing mechanical circulatory support
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Clinical, Genomic Profile and Recurrent Somatic Mutations in 205 Chronic Lymphocytic Leukemia Treatment-Naive Patients
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Computational profiling of the gut–brain axis: microflora dysbiosis insights to neurological disorders
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Applying High-Resolution Variant Classification to Cardiac Arrhythmogenic Gene Testing in a Demographically Diverse Cohort of Sudden Unexplained Deaths
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Chloroplastic ATP synthase builds up a proton motive force preventing production of reactive oxygen species in photosystem I
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BRD3/4 inhibition and FLT3-ligand deprivation target pathways that are essential for the survival of human MLL-AF9+ leukemic cells
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SureSelect XT RNA Direct Protocol for FFPE Transcriptome enrichment and Simultaneous ribosomal RNA removal
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A combination of circulating miRNAs for the early detection of ovarian cancer
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PRC2 is dispensable in vivo for β-catenin-mediated repression of chondrogenesis in the mouse embryonic cranial mesenchyme
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Intestinal cancer progression by mutant p53 through the acquisition of invasiveness associated with complex glandular formation
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A sexually dimorphic pre-stressed translational signature in CA3 pyramidal neurons of BDNF Val66Met mice
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Identification of USP7 as an essential component to maintain integrity and function of non-canonical PRC1.1 in leukemia
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Thermoneutral housing exacerbates nonalcoholic fatty liver disease in mice and allows for sex-independent disease modeling
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Isolation and Comparative Transcriptome Analysis of Human Fetal and iPSC-Derived Cone Photoreceptor Cells
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Epigenetic editing of the Dlg4/PSD95 gene improves cognition in aged and Alzheimer’s disease mice
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Detection and Laboratory Diagnosis of Noroviruses
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NGS-based Genetic Analyses: All Tests Are Not Equally Efficient
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Embryonic Stem Cell Transcriptome Remodeling by a Nucleoporin Substrate for Atrial Fibrillation
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Global Expression Analysis of Quorum Sensing-Controlled Genes by RNAseq
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KDR Mutation: A High-Frequency Rare Mutation and its Correlation with other Somatic Mutations in Indian Colorectal Cancer Patients
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hace1 influences zebrafish cardiac development via ROS-dependent mechanisms
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Microprocessor Recruitment to Elongating RNA Polymerase II Is Required for Differential Expression of MicroRNAs
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Methods for identifying Androgen receptor splice variants in subjects having Castration resistant Prostate cancer
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Factor VII-induced microRNA-135a inhibits autophagy and is associated with poor prognosis in hepatocellular carcinoma
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Hierarchical Clustering-Based Algorithms and In Silico Techniques for Phylogenetic Analysis of Rhizobia
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Age-dependent human β cell proliferation induced by glucagon-like peptide 1 and calcineurin signaling
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Fibroblast-specific TGF-β–Smad2/3 signaling underlies cardiac fibrosis
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Informatics for Nutritional Genetics and Genomics
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Paternal aging over a natural lifetime is directly associated with genetic and epigenetic alterations in the male gamete
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Arid1b Haploinsufficiency Causes Abnormal Brain Gene Expression and Autism-Related Behaviors in Mice
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Integrative model of leukocyte genomics and organ dysfunction in heart failure patients requiring mechanical circulatory support: a prospective observational study
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Myomerger induces fusion of non-fusogenic cells and is required for skeletal muscle development
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Bisphenol A induced apoptosis and transcriptome differences of spermatogonial stem cells in vitro
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Interaction between photosynthetic electron transport and chloroplast sinks triggers protection and signalling important for plant productivity
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Colitic Cancer Develops Through Mutational Alteration Distinct from that in Sporadic Colorectal Cancer: A Comparative Analysis of Mutational Rates at Each Step
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Adult cardiac stem cells are multipotent and robustly myogenic: c-kit expression is necessary but not sufficient for their identification
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Gene duplication in Pseudomonas aeruginosa improves growth on adenosine
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A complement-dependent human long-noncoding RNA induced by Staphylococcus aureus
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Quantitative Assessment of Neural Retina Morphology, Function, and DNA Methylation in an Experimental Model of Diabetic Retinopathy
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Differentially expressed genes in mycorrhized and nodulated roots of common bean are associated with defense, cell wall architecture, N metabolism, and P metabolism
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Transcription of Repeats Activates INterferon (TRAIN) in response to chromatin destabilization induced with anti-cancer small molecule
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3-O-trans-p-coumaroyl-alphitolic acid, a triterpenoid from Zizyphus jujuba, leads to apoptotic cell death in human leukemia cells through reactive oxygen species production and activation of the unfolded protein response
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Increased Susceptibility to Structural Acute Kidney Injury in a Mouse Model of Presymptomatic Cardiomyopathy
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The first sporadic case of DFNA11 identified by next-generation sequencing
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Genetic studies in a patient with X-linked retinoschisis coexisting with developmental delay and sensorineural hearing loss
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OxyR-activated expression of Dps is important for Vibrio cholerae oxidative stress resistance and pathogenesis
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Bisphenol A induced apoptosis and transcriptome differences of spermatogonial stem cells in vitro
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Identification of Osr2 Transcriptional Target Genes in Palate Development
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Cochlear Transcriptome Following Acoustic Trauma and Dexamethasone Administration Identified by a Combination of RNA-seq and DNA Microarray
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Using whole exome sequencing to investigate the genetic bases of lysosomal storage diseases of unknown etiology
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Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Co-operatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice
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Intratumoral acidosis fosters cancer-induced bone pain through the activation of the mesenchymal tumor-associated stroma in bone metastasis from breast carcinoma
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Investigations on the role of microRNAs and gene polymorphisms in the pathogenesis of primary Sjögren’s syndrome
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Stepwise approach to oocyte depletion in Sry mutated XY female mice
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TRAIN in response to treatment with anti-cancer small molecule destabilizing chromatin
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Multifunctional glial support by Semper cells in the Drosophila retina
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Increased S100A15 expression and decreased DNA methylation of its gene promoter are involved in high metastasis potential and poor outcome of lung adenocarcinoma
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Clinical and genetic analysis of Indian patients with NDP-related retinopathies
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Cancer-associated mesenchymal stroma fosters the stemness of osteosarcoma cells in response to intratumoral acidosis via NF-κB activation
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Airway Epithelial Cells Enhance the Immunogenicity of Human Myeloid Dendritic Cells under Steady State
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StrandAdvantage test for early-line and advanced-stage treatment decisions in solid tumors
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The significant expression of TRPV3 in nasal polyps of eosinophilic chronic rhinosinusitis
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Six GU-rich (6GUR) FUS-binding motifs detected by normalization of CLIP-seq by Nascent-seq
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Dynamic Phenotypic Transition of Breast Cancer Cells In Vitro Revealed by Self-floating Cell Culture
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Frequent somatic mutations in epigenetic regulators in newly diagnosed chronic myeloid leukemia
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The effect of extracellular acidosis on the behaviour of mesenchymal stem cells in vitro
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In the hunt for genomic markers of metabolic resistance to pyrethroids in the mosquito Aedes aegypti: An integrated next-generation sequencing approach
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Myomerger Induces Fusion Of Non-Fusogenic Cells And Is Required For Myoblast Fusion
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Upregulation of distinct collagen transcripts in post-surgery scar tissue: a study of conjunctival fibrosis
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MicroRNA expression profiles identify disease-specific alterations in systemic lupus erythematosus and primary Sjo¨gren’s syndrome
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Inhibition of MAPK‐Erk pathway in vivo attenuates aortic valve disease processes in Emilin1‐deficient mouse model
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Whole exome sequencing of discordant diseases in Monozygotic twins with Down syndrome reveals mutations for Congenital Heart Defect and epileptic seizures
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A Knockin Reporter Allows Purification and Characterization of mDA Neurons from Heterogeneous Populations
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The Clinical Next-Generation Sequencing Database: A Tool for the Unified Management of Clinical Information and Genetic Variants to Accelerate Variant Pathogenicity Classification
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Leukocyte Time-Dependent Biology and Outcomes in Advanced Heart Failure
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Universal Human Papillomavirus Typing Assay: Whole-Genome Sequencing following Target Enrichment
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Identification and Characterization of a Missense Mutation in the O-GlcNAc Transferase Gene that Segregates with X-Linked Intellectual Disability
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Canonical Wnt Signaling Ameliorates Aging of Intestinal Stem Cells
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Cilia-dependent GLI processing in neural crest cells is required for tongue development
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Prevalence and coexistence of KRAS, BRAF, PIK3CA, NRAS, TP53, and APC mutations in Indian colorectal cancer patients: Next- generation sequencing–based cohort study
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Defining age- and lactocrine-sensitive elements of the neonatal porcine uterine microRNA–mRNA interactome
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Genetic characterization of Polish ccRCC patients: somatic mutation analysis of PBRM1, BAP1 and KDMC5, genomic SNP array analysis in tumor biopsy and preliminary results of chromosome aberrations analysis in plasma cell free DNA
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Mining Cancer Transcriptomes: Bioinformatic Tools and the Remaining Challenges
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OxyR-activated expression of Dps is important for Vibrio cholerae oxidative stress resistance and pathogenesis
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OxyR2 Modulates OxyR1 Activity and Vibrio cholerae Oxidative Stress Response
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Altered methylation of specific DNA loci in the liver of Bhmt-null mice results in repression of Iqgap2 and F2rl2 and is associated with development of preneoplastic foci
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Genomic Profiling in Non-Small Cell Lung Cancer: New Hope for Personalized Medicine
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Endocan as a prognostic biomarker of triple-negative breast cancer
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Modulation of microRNA-mRNA Target Pairs by Human Papillomavirus 16 Oncoproteins
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Genomic Profiling in Non-Small Cell Lung Cancer: New Hope for Personalized Medicine
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Deep Transcriptomic Profiling of M1 Macrophages Lacking Trpc3
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The Glucocorticoid Receptor Regulates the ANGPTL4 Gene in a CTCF-Mediated Chromatin Context in Human Hepatic Cells
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2016

Engineered human pluripotent-stem-cell-derived intestinal tissues with a functional enteric nervous system
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IL-12: Activation state of glial cells in prion diseases
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Epigenetische Regulation der Chondrozytendifferenzierung
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Translational profiling of stress-induced neuroplasticity in the CA3 pyramidal neurons of BDNF Val66Met mice
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Human gingiva transcriptome during wound healing
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Recurrent mutations in NF-κB pathway components, KMT2D, and NOTCH1/2 in ocular adnexal MALT-type marginal zone lymphomas
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One-carbon metabolism and hepatocellular carcinoma
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Osteocrin, a peptide secreted from the heart and other tissues, contributes to cranial osteogenesis and chondrogenesis in zebrafish
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Novel PDE10A transcript diversity in the human striatum: Insights into gene complexity, conservation and regulation
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Universal Human Papillomavirus Typing Assay: Whole Genome Sequencing Following Target Enrichment
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Clinical Next-Generation Sequencing Database: A Tool for the Unified Management of Clinical Information and Genetic Variants to Accelerate Variant Pathogenicity Classification
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The mammalian LINC complex regulates genome transcriptional responses to substrate rigidity
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Genotype-Phenotype Analysis in an Indian Family Affected with Li-Fraumeni Syndrome-Role of Genetic Counselling
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Incidental Findings in Male Breast Carcinoma: A Genetic Counseling Approach
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Cancer-associated mesenchymal stroma fosters the stemness of osteosarcoma cells in response to intratumoral acidosis via NF-κB acivation
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Endocan as a prognostic biomarker of triple-negative breast cancer
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Shifting transcriptional machinery is required for long-term memory maintenance and modification in Drosophila mushroom bodies
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A Japanese Case of Ichthyosiform Erythroderma with a Novel Mutation in NIPAL4/Ichthyin
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Hydroxyl-HIF2-alpha is potential therapeutic target for renal cell carcinomas
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KiSS1 Is a Regulator of ADAMTS4 and ADAMTS5 Expression and Is Post-Transcriptionally Regulated By Micro-RNA N105 in Human OA Chondrocytes
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High-density array-CGH with targeted NGS unmask multiple noncontiguous minute deletions on chromosome 3p21 in mesothelioma
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Protective neutralizing influenza antibody response in the absence of T follicular helper cells
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Massive parallel sequencing and digital gene expression analysis reveals potential mechanisms to overcome therapy resistance in pulmonary neuroendocrine tumors
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Nucleotide substitutions in CD101, the human homolog of a diabetes susceptibility gene in nonobese diabetic mouse, in patients with type 1 diabetes
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Maintenance of Xist Imprinting Depends on Chromatin Condensation State and Rnf12 Dosage in Mice
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Isolation of New Gravitropic Mutants under Hypergravity Conditions
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Intrinsic Resistance to 5-Fluorouracil in a Brain Metastatic Variant of Human Breast Cancer Cell Line, MDA-MB-231BR
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Next-generation sequencing-based method shows increased mutation detection sensitivity in an Indian retinoblastoma cohort
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Modulation of ambient temperature promotes inflammation and initiates atherosclerosis in wild type C57BL/6 mice
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Bmp4-Msx1 signaling and Osr2 control tooth organogenesis through antagonistic regulation of secreted Wnt antagonists
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Challenges in Targeting a Basic Helix–Loop–Helix Transcription Factor with Hydrocarbon-Stapled Peptides
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Altered pH gardient at teh plasma membrane of osteosarcoma cells is a key mechanism of drug resistance
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HIRA Is Required for Heart Development and Directly Regulates Tnni2 and Tnnt3
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Epithelial expression of human ABO blood-group genes is dependent upon a downstream regulatory element functioning through an epithelial cell-specific transcription factor, Elf5
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Targeted molecular profiling of rare genetic alterations in colorectal cancer using next-generation sequencing
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Supporting Biomedical Research in the Era of Omics and Precision Medicine
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The LG/J Murine Strain Exhibits Near-Normal Tendon Biomechanical Properties Following a Full-Length Central Patellar Tendon Defect
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Gene Panel Testing in Epileptic Encephalopathies and Familial Epilepsies
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De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates
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HIRA Is Required for Heart Development and Directly Regulates Tnni2 and Tnnt3
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Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway
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Application of targeted enrichment to next-generation sequencing of retroviruses integrated into the host human genome
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Genome-wide targets regulated by the OsMADS1 transcription factor reveals its DNA recognition properties
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TNF activation of NF-κB is essential for development of single-positive thymocytes
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Complete in vitro generation of fertile oocytes from mouse primordial germ cells
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Homozygosity mapping guided next generation sequencing to identify the causative genetic variation in inherited retinal degenerative diseases
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Mutations Causing Slow-Channel Myasthenia Reveal that a Valine ring in the Channel Pore of Muscle AChR is Optimized for Stabilizing Channel Gating
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Tungstate treatment of the Dysbiosis associated with Gastrointestinal inflammation
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The Human Toxome Collaboratorium: A Shared Environment for Multi-Omic ComputationalCollaboration within a Consortium
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Design of pathway-preferential estrogens that provide beneficial metabolic and vascular effects without stimulating reproductive tissues
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Next-Generation Sequencing Technology Detects Deletions in the RB1 Gene, Ranging from a Single Base Pair to Whole Gene (~170 kb) with a Higher Sensitivity than FISH
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Utility of Lymphoblastoid Cell Lines for Induced Pluripotent Stem Cell Generation
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Plasma membrane H+-ATPase1 (AHA1) plays a major role in Arabidopsis thaliana for stomatal opening in response to blue light
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Functional Neurons Generated from T Cell-Derived Induced Pluripotent Stem Cells for Neurological Disease Modeling
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Methylation correlates with suppressed expression of immunomodulatory genes in the tumor-adjacent stroma of African American Prostate Cancer compared patients of European American ancestory
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Comprehensive analysis of BRCA (BRCAm) and other germline mutations (GRm) with a clinicopathological association in breast cancer: An Indian study
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SWR1 chromatin-remodelling complex subunits and H2A.Z have non-overlapping functions in immunity and gene regulation in Arabidopsis
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miR-135b, a key regulator of malignancy, is linked to poor prognosis in human myxoid liposarcoma
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Bisulfite oligonucleotide-capture sequencing for targeted base- and strand-specific absolute 5-methylcytosine quantitation
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A homeobox protein, NKX6.1, up-regulates interleukin-6 expression for cell growth in basal-like breast cancer cells
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Laminin regulates PDGFRβ+ cell stemness and muscle development
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Aberrant transcriptional pathways in t(12;21) Acute Lymphoblastic Leukemia
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ZmNAC55, a maize stress-responsive NAC transcription factor, confers drought resistance in transgenic Arabidopsis
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Micro-RNA expression profiling by next-generation sequencing identified novel micro-rnas that are differentially expressed in oa cartilage and chondrocytes
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Efficient in planta detection and dissection of de novo mutation events in the Arabidopsis thaliana disease resistance gene UNI
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A homeobox protein, NKX6.1, up-regulates interleukin-6 expression for cell growth in basal-like breast cancer cells
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Deep sequencing leads to the identification of eukaryotic translation initiation factor 5a as a key element in Rsv1-mediated lethal systemic hypersensitive response to Soybean mosaic virus infection in Soybean
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Genome-Wide Investigation Using sRNA-Seq, Degradome-Seq and Transcriptome-Seq Reveals Regulatory Networks of microRNAs and Their Target Genes in Soybean during Soybean mosaic virus Infection
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Clinical characteristics of a Japanese family with hearing loss accompanied by compound heterozygous mutations in LOXHD1
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Intratumoral heterogeneity identified at the epigenetic, genetic and transcriptional level in glioblastoma
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Multigene profiling to identify clinically relevant actionable mutations in breast cancer: An Indian study
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The Human Toxome Collaboratorium: A Shared Environment for Multi-Omic Computational Collaboration within a Consortium
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Prenatal genetic diagnosis of retinoblastoma and report of RB1 gene mutation from India
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Delineation of metabolic gene clusters in plant genomes by chromatin signatures
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The retrovirus HTLV-1 inserts an ectopic CTCF-binding site into the human genome
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Corona cell RNA sequencing from individual oocytes revealed transcripts and pathways linked to euploid oocyte competence and live birth
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Detection of high frequency of mutations in a breast and/or ovarian cancer cohort: implications of embracing a multi-gene panel in molecular diagnosis in India
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Altered cholesterol biosynthesis causes precocious neurogenesis in the developing mouse forebrain
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Identification and Validation of Housekeeping Genes for Gene Expression Analysis of Cancer Stem Cells
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The renewed battle against RAS-mutant cancers
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Gene expression profiling of white adipose tissue reveals paternal transmission of proneness to obesity
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MicroRNA-27b Enhances the Hepatic Regenerative Properties of Adipose-Derived Mesenchymal Stem Cells
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Systemic Chromosome Instability Resulted in Colonic Transcriptomic Changes in Metabolic, Proliferation, and Stem Cell Regulators in Sgo1−/+ Mice
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Dissecting the molecular mechanisms of the TGF-ß/BMP signal transduction pathways mapping new players and critically assessing established tools
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From Conventional to Next Generation Sequencing of Epstein-Barr Virus Genomes
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A Shh-Foxf-Fgf18-Shh Molecular Circuit Regulating Palate Development
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2015

Simultaneous targeting of 5-LOX-COX and EGFR blocks progression of pancreatic ductal adenocarcinoma
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Transcriptional Regulation of development and tumor-induced Angiogenesis by Etv2 and Fli1b
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Screening of an Indian cohort with breast and/or ovarian cancer by a next-generation sequencing-based panel to detect a high frequency of mutations
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Etv2 and Fli1b Function Together as Key Regulators of Vasculogenesis and Angiogenesis
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An integrative model of leukocyte genomics and organ dysfunction in heart failure patients requiring mechanical circulatory support
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CRCDA—Comprehensive resources for cancer NGS data analysis
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Genetic and epigenetic characterization of hypodiploid acute lymphoblastic leukemia
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Assessment of individual differences in the rat nucleus accumbens transcriptome following taste-heroin extended access
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The Human Milk Oligosaccharide 2'-Fucosyllactose Augments the Adaptive Response to Extensive Intestinal Resection
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Tie2 Signaling Enhances Mast Cell Progenitor Adhesion to Vascular Cell Adhesion Molecule-1 (VCAM-1) through [alpha] 4[Beta]1 Integrin: e0144436
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Sex Specification and Heterogeneity of Primordial Germ Cells in Mice: e0144836
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Adeno-associated Virus Gene Therapy Vector scAAVIGF-I for Transduction of Equine Articular Chondrocytes and RNA-Seq Analysis
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Translational Regulation of the Mitochondrial Genome Following Redistribution of Mitochondrial MicroRNA in the Diabetic Heart
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Intratumoral heterogeneity of DNA repair pathways in glioblastoma
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Age and Nursing Affect the Neonatal Porcine Uterine Transcriptome
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O-linked β-N-acetylglucosamine (O-GlcNAc) acts as a glucose sensor to epigenetically regulate the insulin gene in pancreatic beta cells
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Changes in Methionine Metabolism and Histone H3 Trimethylation Are Linked to Mitochondrial Defects in Multiple Sclerosis
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The gene expression in rat liver carcinogenesis And exhaustive analysis of DNA methylation
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Identification of Novel Micro-RNAs in IL-1β-Stimulated OA Chondrocytes By Next-Generation Sequencing
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Multi-Omics Analysis for Understanding the Molecular Basis of Lung Adenocarcinoma
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De novo point mutations in the male gamete are directly associated with paternal aging and reduced fecundity
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Clinical utility of profiling somatic alterations in Indian cancer patients using a multi-gene next generation sequencing (NGS) test
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Neuronopathic Gaucher Disease: Dysregulated mRNAs and miRNAs in brain pathogenesis and effects of pharmacologic chaperone treatment in a mouse model
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Nutrigenomics in livestock: systems biology meets nuitrition
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Imbalance between the expression dosages of X-chromosome and autosomal genes in mammalian oocytes
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Sequential Binding of MEIS1 and NKX2-5 on the Popdc2 Gene: A Mechanism for Spatiotemporal Regulation of Enhancers during Cardiogenesis
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Detection, validation and visualization of copy number variations in targeted panels without matched normal samples using next generation sequencing data
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β-Caryophyllene attenuates dextran sulfate sodium-induced colitis in mice via modulation of gene expression associated mainly with colon inflammation
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Detection of translocations in clinical cancer samples using targeted NGS data
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Benchmarking Strand NGS RNA aligner against TopHat2 and other common splice aligners
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An integrated RNA and DNA approach to unravel genetic regulation in cancer
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IDH mutant to activate the Hoxa9 / Meis1 path and the low- oxygen signal in acute myeloid leukemia onset model mice
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β-Naphthoflavone induces oxidative stress in the intertidal copepod, Tigriopus japonicus
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A transposable element in a NAC gene is associated with drought tolerance in maize seedling
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Alterations in serum microRNA in humans with alcohol use disorders impact cell proliferation and cell death pathways and predict structural and functional changes in brain
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Novel roles for LIX1L in promoting cancer cell proliferation through ROS1-mediated LIX1L phosphorylation
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An integrated transcriptomics and proteomics study of Head and Neck Squamous Cell Carcinoma – methodological and analytical considerations
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K-bZIP Mediated SUMO-2/3 Specific Modification on the KSHV Genome Negatively Regulates Lytic Gene Expression and Viral Reactivation
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Testicular dysgenesis/regression without campomelic dysplasia in patients carrying missense mutations and upstream deletion of SOX9
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Multi-Omics Analysis for Understanding the Molecular Basis of Lung Adenocarcinoma
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The transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesis
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Methods and Techniques for miRNA Data Analysis
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A novel missense mutation of RYR1 in familial idiopathic hyper CK-emia
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A comparative analysis of high-throughput platforms for validation of a circulating microRNA signature in diabetic retinopathy
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Simulating BZIP2 compression using MAPLE and MAPLET interative applications
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A Comprehensive Profile of ChIP-Seq-Based Olig2 Target Genes in Motor Neuron Progenitor Cells Suggests the Possible Involvement of Olig2 in the Pathogenesis of Amyotrophic Lateral Sclerosis
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Lactocrine signaling and neonatal porcine reproductive tract development
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Cellular Response to ATM Deletion: A Multi-Omics Approach
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Information Flow from Strand NGS 2.1 to GeneSpring 13.0
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Correlation Analysis in Agilent GeneSpring and Mass Profiler Professional
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A missense mutation in domain III in HSPG2 in Schwartz–Jampel syndrome compromises secretion of perlecan into the extracellular space
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Epstein–Barr Virus Genetic Variation in Lymphoblastoid Cell Lines Derived from Kenyan Pediatric Population
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Identification of Non-Coding RNAs Associated with Telomeres Using a Combination of enChIP and RNA Sequencing
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IDH2 and NPM1 mutations cooperate to activate Hoxa9/Meis1 and hypoxia pathways in acute myeloid leukemia
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Identification of novel mutations in ABCA4 gene: Clinical and Genetic analysis of Indian patients with Stargardt disease
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Whole transcriptome expression profiling of mouse limb tendon development by using RNA‐seq
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A Cell-Based Systems Biology Assessment of Human Blood to Monitor Immune Responses after Influenza Vaccination
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Bioinformatics data mining approach indicates the expression of chromatin immunoprecipitation followed by deep sequencing (ChIP- Seq)-based hypoxia-inducible factor-1α target genes in periplaque lesions of multiple sclerosis
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FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice
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Long-Term Safety Issues of iPSC-Based Cell Therapy in a Spinal Cord Injury Model: Oncogenic Transformation with Epithelial- Mesenchymal Transition
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Lysine-specific demethylase LSD2 suppresses lipid influx and metabolism in hepatic cells
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Pathogenesis of Soybean mosaic virus in soybean carrying Rsv1 gene is associated with miRNA and siRNA pathways, and breakdown of AGO1 homeostasis
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A Zap70-dependent feedback circuit is essential for efficient selection of CD4 lineage thymocytes
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2014

A study on the influence of different promoter and 5′ UTR (URM) cassettes from Arabidopsis thaliana on the expression level of the reporter gene β glucuronidase in tobacco and cotton
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Individual corona cell RNA sequencing revealed transcripts associated with oocyte competence and live birth
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A Genome-Wide Transcriptome Analysis Reveals the Differentially Expressed Genes (DEGs) in Panicle of Hybrids and Parents
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Identifying and Evaluating Novel biological targets to improve Musculoskeletal Tissue Engineering Strategies
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Identification of microRNAs involved in acute rejection and spontaneous tolerance in murine hepatic allografts
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Islet Microenvironment, Modulated by Vascular Endothelial Growth Factor-A Signaling, Promotes β Cell Regeneration
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Loss of Ikaros DNA-binding function confers integrin-dependent survival on pre-B cells and progression to acute lymphoblastic leukemia
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Localised Dominant Dystrophic Epidermolysis Bullosa with a Novel de Novo Mutation in COL7A1 Diagnosed by Next-generation Sequencing
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Genome-Wide Analysis of DNA Methylation Dynamics during Early Human Development
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A Comprehensive Profile of ChIP-Seq-Based PU.1/Spi1 Target Genes in Microglia
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A class of genes in the HER2 regulon that is poised for transcription in breast cancer cell lines and expressed in human breast tumors
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The head and neck cancer cell oncogenome: a platform for the development of precision molecular therapies
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S1P-Yap1 Signaling Regulates Endoderm Formation Required for Cardiac Precursor Cell Migration in Zebrafish
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SDF-1/CXCL12 induces directional cell migration and spontaneous metastasis via a CXCR4/Gαi/mTORC1 axis
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Loss of function mutations in RPL27 and RPS27 identified by whole‐exome sequencing in Diamond‐Blackfan anaemia
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The role of maternal-specific H3K9me3 modification in establishing imprinted X-chromosome inactivation and embryogenesis in mice
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Feasibility of Low-Throughput Next Generation Sequencing for Germline DNA Screening
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RNA-seq analysis of the rat placentation site reveals maternal obesity-associated changes in placental and offspring thyroid hormone signaling
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Transcriptome analysis of Musa and its Applications in Banana improvement
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Method and system for genetic trait search based on the phenotype and the genome of a human subject
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Sp8 Function During Craniofacial Development - A post-doctoral thesis submitted by AD Kasberg
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H3K36 Histone Methyltransferase Setd2 Is Required for Murine Embryonic Stem Cell Differentiation toward Endoderm
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Integrative Genomics Approach to Identify Genes Important for H2 Production by Rhodopseudomonas 
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A Cross-species Comparison of the Burkholderia pseudomallei, Burkholderia thailandensis, and Burkholderia mallei Quorum Sensing Regulons
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Whole Genome Sequencing Reveals Novel Non-Synonymous Mutation in Ectodysplasin A (EDA) Associated with Non-Syndromic X- Linked Dominant Congenital Tooth Agenesis
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Comprehensive Next-Generation Sequencing Analyses of Hypoparathyroidism: Identification of Novel GCM2 Mutations
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Google Books: Bioinformatics, Systems Biology, and Systems Medicine
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Targeted deep sequencing of solid tumors to predict response to therapy: A study in an Indian population.
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MicroRNA expression profiling of cat and dog kidneys
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Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature
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Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study
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Milk-borne bioactive factors: effects on neonatal porcine reproductive tissues. KM Rahman - 2014
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Cleavage by signal peptide peptidase is required for the degradation of selected tail-anchored proteins
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Global gene expression analysis following spinal cord injury in non-human primates
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Themis2 Is Not Required for B Cell Development, Activation, and Antibody Responses
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Utility of Neutrophil Fc[gamma] Receptor I (CD64) Index as a Biomarker for Mucosal Inflammation in Pediatric Crohn's Disease
Rea d more

Searching for Genomic Region of High-Fat Diet-Induced Type 2 Diabetes in Mouse Chromosome 2 by Analysis of Congenic Strains
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Overlapping and Asymmetric Functions of TCR Signaling during Thymic Selection of CD4 and CD8 Lineages
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Avadis NGS DNA Read Aligner - A Benchmarking study
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8-oxoguanine causes spontaneous de novo germline mutations in mice
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A Kir3.4 mutation causes Andersen–Tawil syndrome by an inhibitory effect on Kir2.1
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Vascular endothelial growth factor coordinates islet innervation via vascular scaffolding
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The genetics of chemoreception in the labella and tarsi of Aedes aegypti
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MicroRNA-34c is associated with emphysema severity and modulates SERPINE1 expression
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Cardiac Channelopathy Testing in 274 Ethnically Diverse Sudden Unexplained Deaths
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NF-κB signaling mediates homeostatic maturation of new T cells
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Genomic reconnaissance of clinical isolates of emerging human pathogen Mycobacterium abscessus reveals high evolutionary potential
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Glucose Transporter 8 (GLUT8) mediates fructose-induced de novo lipogenesis and macrosteatosis
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Global Analysis of the Burkholderia thailandensis quorum-sensing-controlled regulon
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Maternal Obesity is Associated with a Lipotoxic Placental Environment
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Identification of EMS-induced causal mutations in Arabidopsis thaliana by next-generation sequencing
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2013

Making a Definitive Diagnosis: A Fast-track from Sequence to Answers
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Accelerating Disease Diagnosis Through Automated Genomic Analysis
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Quantitative Transcriptome Analysis Using Next Generation Sequencer Reveals Significant Alternations of Cardiac Gene Expression in Heart Failure
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Genome-wide Association of Yorkie with Chromatin and Chromatin-Remodeling Complexes
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Dissecting the molecular mechanisms of the TGF-ß/BMP signal transduction pathways : mapping new players and critically assessing established tools - Post-doctoral thesis submitted by Janis Vogt, 2013, University of Dundee
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Improved Accuracy and Precision in Clinical Next Generation Sequencing with the SmartChip TE™ Target Enrichment System
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Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases
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Gustatory receptor expression in the labella and tarsi of Aedes aegypti
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Aneuploidy and normal cell contamination aware approach to detect copy number variations in cancer using next generation sequencing data.
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ChIP-Seq Data Mining: Remarkable Differences in NRSF/REST Target Genes between Human ESC and ESC-Derived Neurons
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Coregulation of Terpenoid Pathway Genes and Prediction of Isoprene Production in Bacillus subtilis Using Transcriptomics
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Functional Development of the Octenol Response in Aedes aegypti
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Roles of Bmp4 during tooth morphogenesis and sequential tooth formation
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A comprehensive analysis of the human placenta transcriptome
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The chromatin modification by SUMO-2/3 but not SUMO-1 prevents the epigenetic activation of key immune-related genes during Kaposi's sarcoma associated herpesvirus reactivation
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LRP4 third β-propeller domain mutations cause novel congenital myasthenia by compromising agrin-mediated musk signaling in a position-specific manner
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Odd-skipped related-1 controls neural crest chondrogenesis during tongue development
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Diverse spectrum of rare deafness genes underlies early-childhood hearing loss in Japanese patients: a cross-sectional, multi-center next-generation sequencing study
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The mitochondrial RNA landscape of Saccharomyces cerevisiae
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The housekeeping gene Hypoxanthine Guanine Phosphoribosyltransferase (HPRT) regulates multiple developmental and metabolic pathways of murine embryonic stem cell neuronal differentiation
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Gaucher Disease: Transcriptome analyses using microarray or mRNA sequencing in a Gba1 mutant mouse model treated with Velaglucerase alfa or Imiglucerase
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Asymmetric thymocyte death underlies the CD4:CD8 T-cell ratio in the adaptive immune system
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A Role for Hedgehog Signaling in the Differentiation of the Insertion Site of the Patellar Tendon in the Mouse
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Recombineering-based dissection of flanking and paralogous Hox gene functions in mouse reproductive tracts
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Exome sequencing of senescence-accelerated mice (SAM) reveals deleterious mutations in degenerative disease-causing genes
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Study of Global Transcriptional Changes of N-GlcNAc2 Proteins-Producing T24 Bladder Carcinoma Cells under Glucose Deprivation
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Time-series expression analyses using mRNA-Seq: A statistical approach
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Defining Genetic Blueprints–Kidney and Craniofacial Development
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Poster: 2013 – ZNF9 splicing patterns as potential prognostic markers for severity of Myotonic Dystrophy Type 2
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2012

MeCP2 Binds to 5hmC Enriched within Active Genes and Accessible Chromatin in the Nervous System
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Identification of a p-Coumarate Degradation Regulon in Rhodopseudomonas palustris by Xpression, an Integrated Tool for Prokaryotic RNA-Seq Data Processing
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RNA-Seq defines novel genes, RNA processing patterns and enhancer maps for the early stages of nephrogenesis: Hox supergenes
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Pediatric Biomedical Informatics: Computer Applications in Pediatric Research- By John J. Hutton
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Bioinformatics for High Throughput Sequencing- By Naiara Rodríguez-Ezpeleta, Michael Hackenberg, Ana M. Aransay
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Human ESC/iPSC-based ‘omics’ and bioinformatics for translational research
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High-Throughput Sequencing Data Analysis Software: Current State and Future Developments
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Time Course RNA-seq: A Potential Avenue with Somewhat Different Approach in Tandem of Differential Analysis
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Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines
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A Global Transcriptome Analysis of a Dog Model of Congestive Heart Failure With the Human Genome as a Reference
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Strain-dependent diversity in the Pseudomonas aeruginosa quorum-sensing regulon
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The ribonuclease Dis3 is an essential regulator of the developmental transcriptome
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Position-dependent FUS-RNA interactions regulate alternative splicing events and transcriptions
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Exome Sequencing: Capture and Sequencing of All Human Coding Regions for Disease Gene Discovery
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Retinal Transcriptome Profiling by Directional Next-Generation Sequencing Using 100 ng of Total RNA
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Sequencing Chromosomal Abnormalities Reveals Neurodevelopmental Loci that Confer Risk across Diagnostic Boundaries
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Mutations in the Glycosylphosphatidylinositol Gene PIGL Cause CHIME Syndrome
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RNA-seq Analysis of the Functional Compartments within the Rat Placentation Site
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Transcriptomic landscape of breast cancers through mRNA sequencing
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A novel mutation in SCN4A causes severe myotonia and school-age-onset paralytic episodes
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2011

Podbat: a novel genomic tool reveals Swr1-independent H2A. Z incorporation at gene coding sequences through epigenetic meta-analysis
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An Evolutionarily Conserved Long Noncoding RNA TUNA Controls Pluripotency and Neural Lineage Commitment
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Pronounced and Extensive Microtubule Defects in a Saccharomyces cerevisiae DIS3 Mutant
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LMO7 Mediates Cell-Specific Activation of Rho-MRTF-SRF Pathway and Plays an Important Role in Breast Cancer Cell Migration
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