Strand NGS is an integrated platform that provides analysis, management and visualization tools for next-generation sequencing data. It supports workflows for RNA-Seq, DNA-Seq, ChIP-Seq, Methyl-Seq, MeDIP-Seq and small RNA-Seq experiments

RNA-Seq

Perform gene, exon and transcript level quantification. Identify novel events, differentially expressed genes, gene fusions and splice forms

DNA-Seq

Strand NGS allows detection of SNPs, InDels, CNVs and other SVs. Functional predictions can be made using SIFT, Polyphen2, LRT, MutationTaster and further annotated with information from dbSNP, COSMIC etc

ChIP-Seq

Detect peaks using PICS and MACS. Identify TF regulation binding sites, affected genes and histone modification sites. Discover significant motifs and verify them against JASPAR.

Small RNA-Seq

Strand NGS supports quantification of small RNA species including miRNA, snRNA, snoRNA and scRNA. It also helps identify differentially expressed genes and their corresponding mRNA targets.

Methyl-Seq

Strand NGS supports methylation detection, differential methylation analysis across samples/target regions, and biological interpretation on the affected gene list via GO, pathway analysis etc

Biological Interpretation

Strand NGS provides support for pathway analysis, GO enrichment, GSEA, GSA and NLP derived interaction networks

Server Edition

The Server Edition provides centralized storage, scalable compute and enables collaborative analysis